Publications
Towards Optimally Multiplexed Applications of Universal DNA Tag Systems.
Proceedings of the Seventh Annual International Conference on Research in Computational Molecular Biology (RECOMB'03).
(2003). Towards Optimally Multiplexed Applications of Universal Arrays.
Journal of Computational Biology. 11, 477-493.
(2004). Torque: Topology-Free Querying of Protein Interaction Networks.
Nucleic Acids Research. 37, 106-108.
(2009).
(2009). Torque: Topology-Free Querying of Protein Interaction Networks.
Journal of Computational Biology. 17(3), 237-252.
(2010). Topology-Free Querying of Protein Interaction Networks.
Journal of Computational Biology. 17(3), 237-252.
(2010). Scoring Clustering Solutions by Their Biological Relevance.
Bioinformatics. 2381-2389.
(2003). Revealing Modularity and Organization in the Yeast Molecular Network by Integrated Analysis of Highly Heterogeneous Genome-Wide Data.
Proceedings of the National Academy of Sciences of the United States of America. 101(9), 2981-2986.
(2004). Reconstructing Chain Functions in Genetic Networks.
Proceedings of the Ninth Pacific Symposium on Biocomputing (PSB'04). 498-509.
(2004).
(2012). Prediction of Phenotype Information from Genotype Data.
Communications in Information and Systems. 10(2), 99-114.
(2010).
(2004). Optimally Phasing Long Genomic Regions using Local Haplotype Predictions.
Proceedings of the Second RECOMB Satellite Workshop on Computational Methods for SNPs and Haplotypes. 13-16.
(2004).
(2004). A Note on Optimally Phasing Long Genomic Regions Using Local Haplotype Predictions.
Journal of Bioinformatics and Computational Biology. 4(3), 639-647.
(2006). Multiplexing Schemes for Generic SNP Genotyping Assays.
Proceedings of PSB'04. 140-151.
(2004). Incomplete Directed Perfect Phylogeny.
SIAM Journal on Computing. 33(3), 590-607.
(2004). Idetifying Blocks and Sub-Populations in Noisy SNP Data.
Proceedings of the Third Workshop on Algorithms in Bioinformatics (WABI'03). 303-319.
(2003). Identification of Protein Complexes by Comparative Analysis of Yeast and Bacterial Protein Interaction Data.
Proceedings of RECOMB 2004. 282-289.
(2004). Identification of Protein Complexes by Comparative Analysis of Yeast and Bacterial Protein Interaction Data.
Proceedings of the 8th Annual International Conference on Research in Computational Molecular Biology (RECOMB'04). 282-289.
(2004).
(2003). Identification of Protein Complexes by Comparative Analysis of Yeast and Bacterial Protein Interaction Data.
Journal of Computational Biology. 12(6), 835-846.
(2005). Identification of Protein Complexes by Comparative Analysis of Yeast and Bacterial Protein Interaction Data.
Proceedings of the 8th Annual International Conference on Research in Computational Molecular Biology (RECOMB'04). 282-289.
(2004).
(2003).