Publications
Tag SNP Selection in Genotype Data for Maximizing SNP Prediction Accuracy.
Proceedings of the 13th Annual International Conference on Intelligent Systems for Molecular Biology (ISMB 2005). 195-203.
(2005). Tight Lower Bounds for the Asymetric k-Center Problem.
Proceedings of the 36th Annual ACM Symposium on Theory of Computing (STOC04).
(2004). Accurate Estimation of Expression Levels of Homologous Genes in RNA-Seq Experiments.
18(3), 459-468.
(2011). Association Mapping and Significance Estimation via the Coalescent.
Journal of Human Genetics. 83(6), 675-683.
(2008). Asymmetric K-Center Is Log* N-Hard to Approximate.
Journal of the ACM. 52(4), 538-551.
(2005). Chemokine Polymorphisms and Lymphoma: A Pooled Analysis.
Leukemia and Lymphoma. 51(3), 497-506.
(2010). Common Variation at 6p21.31 (BAK1) Influences the Risk of Chronic Lymphocytic Leukemia.
Blood. 120(4), 843-846.
(2012). A Comparison of Phasing Algorithms for Trios and Unrelated Individuals.
American Journal of Human Genetics. 78(3), 437-450.
(2006). Design of the Coronary Artery Disease Genome-Wide Replication and Meta-Analysis (CARDIoGRAM) Study--A Genome-Wide Association Meta-Analysis Involving More than 22,000 Cases and 60,000 Controls.
Circulation: Cardiovascular Genetics. 3, 475-483.
(2010). Detection of Molecular Paths Associated with Insulitis and Type 1 Diabetes in Non-Obese Diabetic Mouse.
PLoS ONE. 4(10),
(2009). Dynamic Network Topology Changes in Functional Modules Predict Responses to Oxidative Stress in Yeast.
Molecular BioSystems. 5(3), 276-287.
(2009). Efficient Reconstruction of Haplotype Structure Via Perfect Phylogeny.
Journal of Bioinformatics and Computational Biology. 1(1), 1-20.
(2003). EPIQEfficient Detection of SNPSNP Epistatic Interactions for Quantitative Traits.
Bioinformatics. 30(12), i19-i25.
(2014). Estimating Local Ancestry in Admixed Populations.
The American Journal of Human Genetics. 82(2), 290-303.
(2008). Fast and Accurate Inference of Local Ancestry in Latino Populations.
Bioinformatics. 28(10), 1359-1367.
(2012). A Generic Coalescent-Based Framework for the Selection of a Reference Panel for Imputation.
Genetic Epidemiology. 34(8), 773-782.
(2010). Genetic Variants at 6p21.33 Are Associated with Susceptibility to Follicular Lymphoma.
Nature Genetics. 41(8), 873-875.
(2009). Genome-Wide Association Study of Follicular Lymphoma Identifies a Risk Locus at 6p21.32.
Nature Genetics. 42(8), 661-664.
(2010). Genomic Privacy and Limits of Individual Detection in a Pool.
Nature Genetics. 41(9), 965-967.
(2009). Genotype Is a Stronger Determinant than Sex of the Mouse Gut Microbiota.
Microbial Ecology. 61(2), 423-428.
(2011). Genotyping Common and Rare Variation Using Overlapping Pool Sequencing.
BMC Informatics. 12,
(2011). HAPLOPOOL: Improving Haplotype Frequency Estimation Through DNA Pools and Phylogenetic Modeling.
Bioinformatics. 23(22), 3048-3055.
(2007). Haplotype Inference in Complex Pedigrees.
Journal of Computational Biology. 17(3), 269-280.
(2010).
(2004). Historical Pedigree Reconstruction from Extant Populations Using PArtitioning of RElatives (PREPARE).
PLoS Computational Biology. 10(6),
(2014).